Morning guys and thanks in advance, I am working with the Overdose/Equinox base and have noticed the only thing that affects damage being done is the weapon themselves. It does not matter what gear you put on even with 99999 stat bonus, the weapon will still do the same amount of damage depending to the stats on it. Was curious if anyone knew what would cause this or if I am going to have to mess around the CombatFactory or DesolaceFormuals or something! Thanks again!

Dig around your classes a bit more, your answer will be there. I find you will learn and get more value out of engineering and solving a problem your self :). 

Attach a debugger to your server and throw a few tracepoints / watch values; see if you can figure out what's going on.